A RAG system trained on open-source permacuture and sustainable development wikis including Open Source Ecology and One Community Global. This project aims to help individuals and ecovillages design regenerative, sustainable food systems, with an eventual scope including sustainable building and decentralized energy, communication, and water systems.
🚨 Under active development
Tech: Python, ChromaDB, LangChain, MistralAI, Gradio, HuggingFace
A full-stack VR system processing 6-DOF motion tracking input at 360 FPS. Rendered perspective-correct 3D scenes at 120 FPS with < 20ms detection to projection latency. I implemented custom shaders for real-time cube mapping and projection transformations.
⚠️ Unfortunately, the code for this project is not publicly available due to institutional restrictions, but an earlier version can be found in the link below.
Tech: Unity3D, C#, HLSL, Python
This work was featured in Werner Herzog's documentary "Theatre of Thought" and on the ZDF program Terra Xplore: Was kann Dein Gedächtnis? (German only)
The meat of my PhD. I applied linear and non-linear modeling, correlational analyses, and dimensionality reduction methods to understand how the brain integrates vision and body motion in the mouse visual cortex. I built an automated processing pipeline to handle TBs of data from preprocessing through visualization with Snakemake.
⚠️ Unfortunately, the code for this project is not publicly available due to institutional restrictions, but an earlier version of some analysis scripts can be found in the link below.
Tech: Python, Snakemake, SciKit-learn, UMAP-learn, SciPy, NumPy, Pandas, Git
Computer vision pipeline for 1-photon calcium imaging movies. Achieved accurate cell segmentation and fluorescence signal extraction with minimal user input, including demixing temporal activity from spatially overlapping cells and re-identification of cells across experimental sessions.
⚠️ Unfortunately, the code for this project is not publicly available due to institutional restrictions.
Tech: Python, OpenCV, XArray, NumPy, SciPy